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deaD ATP-dependent RNA helicase DeaD [ Escherichia ruysiae ]

Gene ID: 86861308, updated on 3-Dec-2024

Summary

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Gene symbol
deaD
Gene description
ATP-dependent RNA helicase DeaD
Locus tag
RGV86_RS09990
Gene type
protein coding
Organism
Escherichia ruysiae (strain: AB136, nat-host: Canis lupus familiaris)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Old locus tag
RGV86_09990
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Genomic context

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NZ_JAVIWS0100000.1Genomic Context describing neighboring genes Neighboring gene LLM class flavin-dependent oxidoreductase Neighboring gene tryptophan permease Neighboring gene protein YrbN Neighboring gene lipoprotein NlpI Neighboring gene polyribonucleotide nucleotidyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_JAVIWS010000001.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutational analysis of the Escherichia coli DEAD box protein CsdA. Turner AM, et al. J Bacteriol, 2007 Apr. PMID 17259309, Free PMC Article
  2. CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Charollais J, et al. Nucleic Acids Res, 2004. PMID 15148362, Free PMC Article
  3. Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases. Bizebard T, et al. Biochemistry, 2004 Jun 22. PMID 15196029
  4. Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Prud'homme-Généreux A, et al. Mol Microbiol, 2004 Dec. PMID 15554978

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
ATP-dependent RNA helicase DeaD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_JAVIWS010000001.1 Reference assembly

    Range
    2032305..2034194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_001301504.1 MULTISPECIES: ATP-dependent RNA helicase DeaD [Enterobacteriaceae]

    UniProtKB/Swiss-Prot
    Q8XA87
    UniProtKB/TrEMBL
    A0A066QWZ2, A0A0H3PT49, A0A1S9J1M9, A0A4P8BXV8, A0A7U9LK59, A0A9P2PTM8, A0A9Q6V1K2, A0AAD2NR66, A0AAN1AE63, A0AAN4IJT2, A0AAN4NQY7, A0AAV3H4C2, A0AAV3I0R1