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smpB SsrA-binding protein SmpB [ Variovorax paradoxus ]

Gene ID: 86904777, updated on 26-Nov-2024

Summary

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Gene symbol
smpB
Gene description
SsrA-binding protein SmpB
Locus tag
RZE77_RS14520
Gene type
protein coding
Organism
Variovorax paradoxus (strain: SPNA7, nat-host: Legume root)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax
Old locus tag
RZE77_14520
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Genomic context

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NZ_CP138513.1Genomic Context describing neighboring genes Neighboring gene RnfH family protein Neighboring gene type II toxin-antitoxin system RatA family toxin Neighboring gene hypothetical protein Neighboring gene sigma-70 family RNA polymerase sigma factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP138513.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
  2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
  3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
  4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
  5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
SsrA-binding protein SmpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP138513.1 Reference assembly

    Range
    3101459..3101935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012747861.1 MULTISPECIES: SsrA-binding protein SmpB [Variovorax]

    See identical proteins and their annotated locations for WP_012747861.1

    UniProtKB/TrEMBL
    A0A0H2LZJ2, A0A3P3EN78, C5CLX2
Nucleotide Protein
Heading Accession and Version