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ompR two-component system response regulator OmpR [ Variovorax paradoxus ]

Gene ID: 86904940, updated on 26-Nov-2024

Summary

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Gene symbol
ompR
Gene description
two-component system response regulator OmpR
Locus tag
RZE77_RS15335
Gene type
protein coding
Organism
Variovorax paradoxus (strain: SPNA7, nat-host: Legume root)
Lineage
Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax
Old locus tag
RZE77_15335
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Genomic context

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NZ_CP138513.1Genomic Context describing neighboring genes Neighboring gene SIMPL domain-containing protein Neighboring gene hypothetical protein Neighboring gene sensor histidine kinase Neighboring gene 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Neighboring gene 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP138513.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Role of OmpR in the Expression of Genes of the KdgR Regulon Involved in the Uptake and Depolymerization of Oligogalacturonides in Yersinia enterocolitica. Nieckarz M, et al. Front Cell Infect Microbiol, 2017. PMID 28861396, Free PMC Article
  2. Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis. Gao H, et al. BMC Microbiol, 2011 Feb 23. PMID 21345178, Free PMC Article
  3. Gene activation by the Escherichia coli positive regulator, OmpR. Phosphorylation-independent mechanism of activation by an OmpR mutant. Tsuzuki M, et al. J Mol Biol, 1994 Oct 7. PMID 7932717
  4. Purification and characterization of the OmpR protein, a positive regulator involved in osmoregulatory expression of the ompF and ompC genes in Escherichia coli. Jo YL, et al. J Biol Chem, 1986 Nov 15. PMID 3533941
  5. The response regulator OmpR oligomerizes via beta-sheets to form head-to-head dimers. Maris AE, et al. J Mol Biol, 2005 Jul 29. PMID 15979641

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
two-component system response regulator OmpR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP138513.1 Reference assembly

    Range
    3266737..3267468
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012747691.1 MULTISPECIES: two-component system response regulator OmpR [Variovorax]

    See identical proteins and their annotated locations for WP_012747691.1

    UniProtKB/TrEMBL
    A0A0H2LSQ5, A0A0Q6NDV4, A0A1G8VCV5, A0A3P3EJ75, C5CKQ4, T1XD46
Nucleotide Protein
Heading Accession and Version