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arnT 4-amino-4-deoxy-L-arabinose lipid A transferase [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 879122, updated on 11-Sep-2024

Summary

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Gene symbol
arnT
Gene description
4-amino-4-deoxy-L-arabinose lipid A transferase
Locus tag
PA3556
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (3984890..3986539)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase Neighboring gene undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase Neighboring gene bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase Neighboring gene 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Neighboring gene 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE Neighboring gene 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF Neighboring gene nucleotide sugar dehydrogenase Neighboring gene PTS system fructose-specific transporter subunit IIBC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An inner membrane enzyme in Salmonella and Escherichia coli that transfers 4-amino-4-deoxy-L-arabinose to lipid A: induction on polymyxin-resistant mutants and role of a novel lipid-linked donor. Trent MS, et al. J Biol Chem, 2001 Nov 16. PMID 11535604
  2. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Cantarel BL, et al. Nucleic Acids Res, 2009 Jan. PMID 18838391, Free PMC Article
  3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within beta-L-Ara4N-lipid A biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within response to antibiotic ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in Gram-negative-bacterium-type cell wall ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
4-amino-4-deoxy-L-arabinose lipid A transferase
NP_252246.1
  • Product name confidence: class 2 (High similarity to functionally studied protein)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    3984890..3986539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_252246.1 4-amino-4-deoxy-L-arabinose lipid A transferase [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_252246.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HY61
    Conserved Domains (1) summary
    PRK13279
    Location:1 → 546
    arnT; lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HY61.1

Gene LinkOut

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