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dgcB dimethylglycine catabolism protein DgcB [ Pseudomonas aeruginosa PAO1 ]

Gene ID: 882141, updated on 24-Aug-2024

Summary

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Gene symbol
dgcB
Gene description
dimethylglycine catabolism protein DgcB
Locus tag
PA5399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudomonas aeruginosa PAO1 (strain: PAO1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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Genomic context

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Sequence:
NC_002516.2 (6078044..6080005)

NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene dimethylglycine catabolism protein DgcA Neighboring gene electron transfer flavoprotein subunit alpha Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002516.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism. Wargo MJ, et al. J Bacteriol, 2008 Apr. PMID 17951379, Free PMC Article
  2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
  3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
  4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
  5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PseudoCAP

Function Evidence Code Pubs
enables dimethylglycine dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dimethylglycine oxidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within choline catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within glycine betaine catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
dimethylglycine catabolism protein DgcB
NP_254086.1
  • class 1: Function experimentally demonstrated in P. aeruginosa

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002516.2 Reference assembly

    Range
    6078044..6080005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_254086.1 dimethylglycine catabolism protein DgcB [Pseudomonas aeruginosa PAO1]

    See identical proteins and their annotated locations for NP_254086.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q9HTG5
    Conserved Domains (2) summary
    COG0247
    Location:235 → 632
    GlpC; Fe-S oxidoreductase [Energy production and conversion]
    pfam11982
    Location:23 → 220
    DUF3483; Domain of unknown function (DUF3483)
Nucleotide Protein
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