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DEHA2B15818g DEHA2B15818p [ Debaryomyces hansenii CBS767 ]

Gene ID: 8998267, updated on 17-May-2024

Summary

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Gene symbol
DEHA2B15818g
Gene description
DEHA2B15818p
Locus tag
DEHA2B15818g
See related
FungiDB:DEHA2B15818g; VEuPathDB:DEHA2B15818g
Gene type
protein coding
RNA name
DEHA2B15818p
RefSeq status
PROVISIONAL
Organism
Debaryomyces hansenii CBS767 (strain: CBS767, type-material: culture from type material of Debaryomyces hansenii)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces
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Genomic context

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See DEHA2B15818g in Genome Data Viewer
Location:
chromosome: B
Exon count:
1
Sequence:
Chromosome: B; NC_006044.2 (1247219..1250218, complement)

Chromosome B - NC_006044.2Genomic Context describing neighboring genes Neighboring gene DEHA2B15774p Neighboring gene DEHA2B15796p Neighboring gene DEHA2B15840p Neighboring gene DEHA2B15862p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006044.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome evolution in yeasts. Dujon B, et al. Nature, 2004 Jul 1. PMID 15229592
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEHA2B15818p
XP_002770136.1
  • similar to uniprot|P25847 Saccharomyces cerevisiae YOL090W MSH2 Protein that bind to DNA mismatches to initiate the mismatch repair process

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006044.2 Reference assembly

    Range
    1247219..1250218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002770090.1 → XP_002770136.1  DEHA2B15818p [Debaryomyces hansenii CBS767]

    See identical proteins and their annotated locations for XP_002770136.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5RSW8
    Conserved Domains (6) summary
    smart00533
    Location:334 → 687
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam01624
    Location:13 → 119
    MutS_I; MutS domain I
    pfam05188
    Location:151 → 289
    MutS_II; MutS domain II
    pfam05190
    Location:505 → 598
    MutS_IV; MutS family domain IV
    pfam05192
    Location:308 → 407
    MutS_III; MutS domain III
    cl21455
    Location:676 → 915
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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