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ppdD prepilin peptidase-dependent pilin [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 913629, updated on 6-Aug-2024

Summary

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Gene symbol
ppdD
Gene description
prepilin peptidase-dependent pilin
Locus tag
ECs_0112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (121599..122039, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene GMP reductase Neighboring gene assembly protein in type IV pilin biogenesis transmembrane protein Neighboring gene type II secretion system protein HofB Neighboring gene quinolinate phosphoribosyltransferase Neighboring gene 1,6-anhydro-N-acetylmuramyl-L-alanine amidase Neighboring gene ampicillin resistance inner membrane protein AmpE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
prepilin peptidase-dependent pilin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    121599..122039 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308139.1 prepilin peptidase-dependent pilin [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308139.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1N2J3
    Conserved Domains (1) summary
    PRK10574
    Location:1 → 146
    PRK10574; putative major pilin subunit; Provisional
Nucleotide Protein
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