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phnD phosphonate ABC transporter periplasmic binding protein [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914245, updated on 6-Oct-2023

Summary

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Gene symbol
phnD
Gene description
phosphonate ABC transporter periplasmic binding protein
Locus tag
ECs_5087
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (5178310..5179326, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene transcriptional regulator of phosphonate uptake and biodegradation Neighboring gene phosphonate ABC transporter permease protein PhnE Neighboring gene phosphonate ABC transporter ATPase Neighboring gene metalloprotein superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
phosphonate ABC transporter periplasmic binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    5178310..5179326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_313114.1 phosphonate ABC transporter periplasmic binding protein [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_313114.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7TST9
    Conserved Domains (1) summary
    cd13575
    Location:28 → 284
    PBP2_PnhD; Substrate binding domain of ABC-type phosphonate uptake system; contains the type 2 periplasmic binding fold
Nucleotide Protein
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