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kdsD D-arabinose 5-phosphate isomerase [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 916080, updated on 6-Aug-2024

Summary

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Gene symbol
kdsD
Gene description
D-arabinose 5-phosphate isomerase
Locus tag
ECs_4076
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (4083747..4084733)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene organic solvent ABC transporter ATP-binding protein Neighboring gene calcium/sodium:proton antiporter Neighboring gene 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Neighboring gene periplasmic membrane-anchored LPS-binding protein Neighboring gene lipopolysaccharide export system protein LptA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
D-arabinose 5-phosphate isomerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_312103.1 D-arabinose 5-phosphate isomerase [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_312103.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FYV7, A0A376JTI0, A0A403CYH1
    Conserved Domains (1) summary
    PRK10892
    Location:3 → 328
    PRK10892; arabinose-5-phosphate isomerase KdsD
Nucleotide Protein
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