U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNR39B [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164896, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
SNR39B
Primary source
SGD:S000007303
Locus tag
YNCG0015C
See related
AllianceGenome:SGD:S000007303
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA 2'-O-ribose methylation guide activity. Involved in rRNA methylation. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SNR39B in Genome Data Viewer
Location:
chromosome: VII
Exon count:
1
Sequence:
Chromosome: VII; NC_001139.9 (366374..366469, complement)

Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene Hnm1p Neighboring gene ribosomal 60S subunit protein L7A Neighboring gene ncRNA Neighboring gene Mps2p Neighboring gene stress-responsive transcription factor HSF1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_001139.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A computational screen for methylation guide snoRNAs in yeast. Lowe TM, et al. Science, 1999 Feb 19. PMID 10024243
  2. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
  3. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article
  4. Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation. Bhutada P, et al. Nucleic Acids Res, 2022 Sep 23. PMID 36018804, Free PMC Article
  5. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. Creamer TJ, et al. PLoS Genet, 2011 Oct. PMID 22028667, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
  • C/D box small nucleolar RNA (snoRNA); guides 2'-O-methylation of large subunit (LSU) rRNA at position G805

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA 2'-O-ribose methylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables rRNA 2'-O-ribose methylation guide activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA methylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA methylation ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001139.9 Reference assembly

    Range
    366374..366469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132181.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials