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RDN5-1 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164945, updated on 9-Dec-2024

Summary

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Official Symbol
RDN5-1
Primary source
SGD:S000006479
Locus tag
YNCL0018W
See related
AllianceGenome:SGD:S000006479
Gene type
rRNA
RNA name
5S ribosomal RNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
A structural constituent of ribosome. Involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See RDN5-1 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_001144.5 (459676..459796)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene 18S ribosomal RNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene 25S ribosomal RNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001144.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vivo analyses of upstream promoter sequence elements in the 5 S rRNA gene from Saccharomyces cerevisiae. Lee Y, et al. J Mol Biol, 1997 Jun 27. PMID 9223632
  2. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae. Meskauskas A, et al. RNA, 2001 Aug. PMID 11497428, Free PMC Article
  3. Ribosomal 5 S rRNA maturation in Saccharomyces cerevisiae. Lee Y, et al. J Biol Chem, 1997 Jun 13. PMID 9182543
  4. Assembly of 5S ribosomal RNA is required at a specific step of the pre-rRNA processing pathway. Dechampesme AM, et al. J Cell Biol, 1999 Jun 28. PMID 10385518, Free PMC Article
  5. RNAP-II transcribes two small RNAs at the promoter and terminator regions of the RNAP-I gene in Saccharomyces cerevisiae. Mayán MD. Yeast, 2013 Jan. PMID 23280698

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • 5S ribosomal RNA (5S rRNA); only complete sequence of 6 repeated RDN5 alleles; able to support viability when provided as sole form of 5S rRNA; component of the large (60S) ribosomal subunit; localized to the nucleolus via interaction with Rpl5p; may play a role in translational frame fidelity; transcription is mediated by PolIII and activated by TFIIIA and TFIIIE

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    459676..459796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132215.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases
Research Materials