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SNR31 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164979, updated on 9-Dec-2024

Summary

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Official Symbol
SNR31
Primary source
SGD:S000007296
Locus tag
YNCO0027C
See related
AllianceGenome:SGD:S000007296
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See SNR31 in Genome Data Viewer
Location:
chromosome: XV
Exon count:
1
Sequence:
Chromosome: XV; NC_001147.6 (841958..842182, complement)

Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Rim20p Neighboring gene Caf20p Neighboring gene ncRNA Neighboring gene uroporphyrinogen-III synthase HEM4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001147.6

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and functional analysis of a novel yeast small nucleolar RNA. Dandekar T, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265353, Free PMC Article
  2. SnR31, snR32, and snR33: three novel, non-essential snRNAs from Saccharomyces cerevisiae. Balakin AG, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265354, Free PMC Article
  3. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Lafontaine DL, et al. Genes Dev, 1998 Feb 15. PMID 9472021, Free PMC Article
  4. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Ni J, et al. Cell, 1997 May 16. PMID 9160748
  5. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of small subunit (SSU) rRNA at position U999

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA pseudouridylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleolus IC
Inferred by Curator
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001147.6 Reference assembly

    Range
    841958..842182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132264.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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