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ddpB D,D-dipeptide ABC transporter permease [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 917289, updated on 10-Oct-2024

Summary

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Gene symbol
ddpB
Gene description
D,D-dipeptide ABC transporter permease
Locus tag
ECs_2090
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (2081287..2082267, complement)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene peroxiredoxin osmC Neighboring gene D,D-dipeptide ABC transporter ATPase Neighboring gene D,D-dipeptide ABC transporter ATPase Neighboring gene D,D-dipeptide ABC transporter permease Neighboring gene D,D-dipeptide ABC transporter periplasmic binding protein Neighboring gene D-ala-D-ala dipeptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
D,D-dipeptide ABC transporter permease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    2081287..2082267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_310117.2 D,D-dipeptide ABC transporter permease [Escherichia coli O157:H7 str. Sakai]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6G4C4B1, A0AAN1S4N3
    Conserved Domains (1) summary
    COG0601
    Location:2 → 324
    DppB; ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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