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LOC9306955 E3 ubiquitin-protein ligase SINA-like 10 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9306955, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9306955
Gene description
E3 ubiquitin-protein ligase SINA-like 10
Locus tag
ARALYDRAFT_494183
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9306955 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (24597251..24598574)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene probable S-adenosylmethionine-dependent methyltransferase At5g37970 Neighboring gene NADPH-dependent oxidoreductase 2-alkenal reductase Neighboring gene uncharacterized LOC9304892 Neighboring gene putative E3 ubiquitin-protein ligase SINA-like 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SINA-like 10
Names
seven in absentia family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    24597251..24598574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002868773.2 → XP_002868819.1  E3 ubiquitin-protein ligase SINA-like 10

    See identical proteins and their annotated locations for XP_002868819.1

    UniProtKB/TrEMBL
    D7MK76
    Conserved Domains (1) summary
    cl19105
    Location:156 → 226
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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