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LOC9308590 subtilisin-like protease SBT3.7 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9308590, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9308590
Gene description
subtilisin-like protease SBT3.7
Locus tag
ARALYDRAFT_663122
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9308590 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (20397083..20401086)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110227817 Neighboring gene protein DMR6-LIKE OXYGENASE 1 Neighboring gene uncharacterized LOC110227145 Neighboring gene subtilisin-like protease SBT3.10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
subtilisin-like protease SBT3.7
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    20397083..20401086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002872475.2 → XP_002872521.1  subtilisin-like protease SBT3.7 isoform X2

    See identical proteins and their annotated locations for XP_002872521.1

    UniProtKB/TrEMBL
    D7LYP8
    Conserved Domains (4) summary
    cd04852
    Location:98 → 578
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:352 → 480
    PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
    pfam00082
    Location:193 → 591
    Peptidase_S8; Subtilase family
    pfam05922
    Location:22 → 99
    Inhibitor_I9; Peptidase inhibitor I9

  2. XM_021020636.1 → XP_020876295.1  subtilisin-like protease SBT3.7 isoform X1

    Conserved Domains (3) summary
    cd04852
    Location:110 → 590
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:364 → 492
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:34 → 111
    Inhibitor_I9; Peptidase inhibitor I9
Nucleotide Protein
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