U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9318578 desumoylating isopeptidase 1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9318578, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC9318578
Gene description
desumoylating isopeptidase 1
Locus tag
ARALYDRAFT_671532
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9318578 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (2980828..2982883, complement)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9320690 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene probable serine/threonine-protein kinase PBL26 Neighboring gene uncharacterized vacuolar membrane protein YML018C Neighboring gene protein transport protein Sec24-like At3g07100 Neighboring gene cytochrome b5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification by small protein removal IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
desumoylating isopeptidase 1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    2980828..2982883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021031872.1 → XP_020887531.1  desumoylating isopeptidase 1

    UniProtKB/TrEMBL
    D7L631
    Conserved Domains (1) summary
    pfam05903
    Location:6 → 146
    Peptidase_C97; PPPDE putative peptidase domain

  2. XM_002884579.2 → XP_002884625.1  desumoylating isopeptidase 1

    See identical proteins and their annotated locations for XP_002884625.1

    UniProtKB/TrEMBL
    D7L631
    Conserved Domains (1) summary
    pfam05903
    Location:6 → 146
    Peptidase_C97; PPPDE putative peptidase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials