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LOC9320340 putative glucose-6-phosphate 1-epimerase [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9320340, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9320340
Gene description
putative glucose-6-phosphate 1-epimerase
Locus tag
ARALYDRAFT_896086
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9320340 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (168871..171714, complement)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene cell division control protein 48 homolog C Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1 Neighboring gene putative pentatricopeptide repeat-containing protein At3g01580 Neighboring gene uncharacterized LOC110230045

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative glucose-6-phosphate 1-epimerase
Names
aldose 1-epimerase family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    168871..171714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021032500.1 → XP_020888159.1  putative glucose-6-phosphate 1-epimerase isoform X1

    Conserved Domains (1) summary
    cd09020
    Location:14 → 320
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

  2. XM_021032499.1 → XP_020888158.1  putative glucose-6-phosphate 1-epimerase isoform X1

    Conserved Domains (1) summary
    cd09020
    Location:14 → 320
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

  3. XM_021032498.1 → XP_020888157.1  putative glucose-6-phosphate 1-epimerase isoform X1

    Conserved Domains (1) summary
    cd09020
    Location:14 → 320
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

  4. XM_021032497.1 → XP_020888156.1  putative glucose-6-phosphate 1-epimerase isoform X1

    Conserved Domains (1) summary
    cd09020
    Location:14 → 320
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

  5. XM_021032501.1 → XP_020888160.1  putative glucose-6-phosphate 1-epimerase isoform X2

    UniProtKB/TrEMBL
    D7L9N3
    Conserved Domains (1) summary
    cd09020
    Location:14 → 285
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

  6. XM_002884228.2 → XP_002884274.1  putative glucose-6-phosphate 1-epimerase isoform X2

    See identical proteins and their annotated locations for XP_002884274.1

    UniProtKB/TrEMBL
    D7L9N3
    Conserved Domains (1) summary
    cd09020
    Location:14 → 285
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
Nucleotide Protein
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