U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9327621 uncharacterized LOC9327621 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9327621, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC9327621
Gene description
uncharacterized LOC9327621
Locus tag
ARALYDRAFT_891942
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9327621 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (26138084..26147466, complement)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9330295 Neighboring gene 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Neighboring gene leucine--tRNA ligase, cytoplasmic Neighboring gene sirohydrochlorin ferrochelatase, chloroplastic Neighboring gene putative disease resistance protein At1g50180

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC9327621

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    26138084..26147466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021011035.1 → XP_020866694.1  uncharacterized protein LOC9327621 isoform X2

    Conserved Domains (1) summary
    COG0464
    Location:532 → 952
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

  2. XM_002894188.2 → XP_002894234.1  uncharacterized protein LOC9327621 isoform X1

    See identical proteins and their annotated locations for XP_002894234.1

    UniProtKB/TrEMBL
    D7KFW2
    Conserved Domains (2) summary
    smart00382
    Location:749 → 884
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:751 → 882
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials