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yoeB type II toxin-antitoxin system mRNA interferase toxin YoeB [ Shigella sonnei ]

Gene ID: 93775157, updated on 3-Dec-2024

Summary

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Gene symbol
yoeB
Gene description
type II toxin-antitoxin system mRNA interferase toxin YoeB
Locus tag
C1P89_RS03850
Gene type
protein coding
RefSeq status
PIPELINE
Organism
Shigella sonnei (strain: ATCC 29930, culture-collection: ATCC:29930, type-material: type strain of Shigella sonnei)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
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Genomic context

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NZ_CP026802.1Genomic Context describing neighboring genes Neighboring gene ATP phosphoribosyltransferase Neighboring gene his operon leader peptide Neighboring gene YoeB-YefM toxin-antitoxin system antitoxin YefM Neighboring gene SDR family oxidoreductase Neighboring gene LysR substrate-binding domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP026802.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Influence of operator site geometry on transcriptional control by the YefM-YoeB toxin-antitoxin complex. Bailey SE, et al. J Bacteriol, 2009 Feb. PMID 19028895, Free PMC Article
  2. Translation affects YoeB and MazF messenger RNA interferase activities by different mechanisms. Christensen-Dalsgaard M, et al. Nucleic Acids Res, 2008 Nov. PMID 18854355, Free PMC Article
  3. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Kamada K, et al. Mol Cell, 2005 Aug 19. PMID 16109374
  4. Ectopic production of VapCs from Enterobacteria inhibits translation and trans-activates YoeB mRNA interferase. Winther KS, et al. Mol Microbiol, 2009 May. PMID 19400780
  5. The inhibitory mechanism of protein synthesis by YoeB, an Escherichia coli toxin. Zhang Y, et al. J Biol Chem, 2009 Mar 13. PMID 19124462, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type II toxin-antitoxin system mRNA interferase toxin YoeB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP026802.1 Reference assembly

    Range
    749003..749257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_000767829.1 MULTISPECIES: type II toxin-antitoxin system mRNA interferase toxin YoeB [Enterobacteriaceae]

    See identical proteins and their annotated locations for WP_000767829.1

    Status: PIPELINE

    UniProtKB/Swiss-Prot
    P56605, P69348, P69349, Q2EES4, Q2MAY7
    UniProtKB/TrEMBL
    A0A0E0XX58, A0A0E2L4E6, A0A0I0DWT3, A0A0J3YU62, A0A1X3JE32, A0A2S8D9Z9, A0A2S8DMT7, A0A370V9A0, A0A4P7TL20, A0A4P8C0X5, A0A5F1EW14, A0A658Y3I6, A0A6H2GCU5, A0A7K4I2Q0, A0A7U9IXG3, A0A7U9M031, A0A7W4KLH6, A0A828U7D1, A0A829KT67, A0A836ZDQ0, A0A979GFY8, A0A9P2IBW3, A0A9Q6Y2W0, A0AA35F655, A0AAD2NYT1, A0AAD2V509, A0AAD2VJ49, A0AAD2YVL0, A0AAN1S750, A0AAN3SD03, A0AAN3V9M7, A0AAP9MSC9, A7ZNI9, B2TYG3, B7L9P3, B7LUE8, B7MDH1, B7UT53, C0ST60, D2A6U3, E0J158, G1UFR9, G1UG24, G1UG77, G1UGD0, J7QFC0, Q0T3B1, Q3Z0G9, W1F3U3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P69348.1