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rayT REP-associated tyrosine transposase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944913, updated on 3-Dec-2024

Summary

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Official Symbol
rayT
Official Full Name
REP-associated tyrosine transposase
Primary source
ECOCYC:G6112
Locus tag
b0228
See related
ASAP:ABE-0000779
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0229; yafM
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Genomic context

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Sequence:
NC_000913.3 (247637..248134)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene antitoxin/DNA-binding transcriptional repressor DinJ Neighboring gene NlpC/P60 family protein YafL Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Monitoring RAYT activity by surface plasmon resonance biosensor. Bocková M, et al. Anal Bioanal Chem, 2015 May. PMID 25636231
  2. The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease. Messing SA, et al. Nucleic Acids Res, 2012 Oct. PMID 22885300, Free PMC Article
  3. Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences. Ton-Hoang B, et al. Nucleic Acids Res, 2012 Apr. PMID 22199259, Free PMC Article
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA hairpin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables bubble DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables transposase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within DNA recombination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in DNA transposition IEA
Inferred from Electronic Annotation
more info
  
involved_in transposition IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
REP-associated tyrosine transposase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    247637..248134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414763.1 REP-associated tyrosine transposase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414763.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T3UWD3
    Conserved Domains (1) summary
    COG1943
    Location:1 → 135
    RAYT; REP element-mobilizing transposase RayT [Mobilome: prophages, transposons]
Nucleotide Protein
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