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ppnP nucleoside phosphorylase PpnP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945048, updated on 17-Dec-2024

Summary

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Official Symbol
ppnP
Official Full Name
nucleoside phosphorylase PpnP
Primary source
ECOCYC:EG12159
Locus tag
b0391
See related
ASAP:ABE-0001360
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0386; yaiE
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Genomic context

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Sequence:
NC_000913.3 (408177..408461)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YaiA Neighboring gene protein AroM Neighboring gene pseudo Neighboring gene protein YkiD Neighboring gene nucleoid-associated protein RdgC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structures of a new class of pyrimidine/purine nucleoside phosphorylase revealed a Cupin fold. Wen Y, et al. Proteins, 2022 Jun. PMID 35094440
  2. Recombination-dependent growth in exonuclease-depleted recBC sbcBC strains of Escherichia coli K-12. Ryder L, et al. Genetics, 1996 Jul. PMID 8807285, Free PMC Article
  3. Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli. Sévin DC, et al. Nat Methods, 2017 Feb. PMID 27941785
  4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables deoxyuridine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables guanosine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables purine-nucleoside phosphorylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables purine-nucleoside phosphorylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables purine-nucleoside phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyrimidine-nucleoside phosphorylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables pyrimidine-nucleoside phosphorylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyrimidine-nucleoside phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables thymidine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
enables uridine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
nucleoside phosphorylase PpnP
NP_414925.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    408177..408461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414925.1 nucleoside phosphorylase PpnP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414925.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0G0E8
    Conserved Domains (1) summary
    PRK10579
    Location:1 → 94
    PRK10579; pyrimidine/purine nucleoside phosphorylase
Nucleotide Protein
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