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ybaB putative nucleoid-associated protein YbaB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945104, updated on 3-Dec-2024

Summary

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Official Symbol
ybaB
Official Full Name
putative nucleoid-associated protein YbaB
Primary source
ECOCYC:EG11100
Locus tag
b0471
See related
ASAP:ABE-0001636
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0465
Summary
otherPDB (H. influenzae): [More information is available at EcoGene: EG11100]. The ybaB gene is regulated by sigmaE, suggesting involvement in the extracytoplasmic stress response . [More information is available at EcoCyc: EG11100].
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Genomic context

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Sequence:
NC_000913.3 (494076..494405)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene adenine phosphoribosyltransferase Neighboring gene DNA polymerase III subunit gamma;DNA polymerase III subunit tau Neighboring gene recombination mediator protein RecR Neighboring gene chaperone protein HtpG Neighboring gene adenylate kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Escherichia coli Proteome Microarrays Identified the Substrates of ClpYQ Protease. Tsai CH, et al. Mol Cell Proteomics, 2017 Jan. PMID 27864322, Free PMC Article
  2. The recR locus of Escherichia coli K-12: molecular cloning, DNA sequencing and identification of the gene product. Mahdi AA, et al. Nucleic Acids Res, 1989 Sep 12. PMID 2674903, Free PMC Article
  3. Sequence and expression of the Escherichia coli recR locus. Yeung T, et al. J Bacteriol, 1990 Oct. PMID 1698765, Free PMC Article
  4. The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame. Flower AM, et al. Nucleic Acids Res, 1986 Oct 24. PMID 3534795, Free PMC Article
  5. Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome. Balasubramanian S, et al. Nucleic Acids Res, 2000 Aug 15. PMID 10931922, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. YbaB was demonstrated to be a DNA-binding protein
    Title: DNA-binding by Haemophilus influenzae and Escherichia coli YbaB, members of a widely-distributed bacterial protein family.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in bacterial nucleoid IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoid IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative nucleoid-associated protein YbaB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    494076..494405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415004.1 putative nucleoid-associated protein YbaB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415004.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A192CJC6, A0AA36P4X6, Q1RF64
    Conserved Domains (1) summary
    PRK00153
    Location:3 → 105
    PRK00153; YbaB/EbfC family nucleoid-associated protein
Nucleotide Protein
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