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ybcO putative nuclease YbcO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945147, updated on 3-Dec-2024

Summary

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Official Symbol
ybcO
Official Full Name
putative nuclease YbcO
Primary source
ECOCYC:G6305
Locus tag
b0549
See related
ASAP:ABE-0001878
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0540
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Genomic context

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Sequence:
NC_000913.3 (573084..573374)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene uncharacterized protein YlcH Neighboring gene DNA base-flipping protein Neighboring gene NinE family prophage protein Neighboring gene crossover junction endodeoxyribonuclease RusA Neighboring gene uncharacterized protein YlcG Neighboring gene prophage antitermination protein Q homolog QuuD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. Mahdi AA, et al. J Mol Biol, 1996 Apr 5. PMID 8648624
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  4. Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification. Liu F, et al. Nat Commun, 2017 May 19. PMID 28524877, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative nuclease YbcO

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    573084..573374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415081.1 putative nuclease YbcO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415081.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A444R6Z3
    Conserved Domains (1) summary
    pfam07102
    Location:2 → 92
    DUF1364; Protein of unknown function (DUF1364)
Nucleotide Protein
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