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ninE NinE family prophage protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945151, updated on 3-Dec-2024

Summary

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Official Symbol
ninE
Official Full Name
NinE family prophage protein
Primary source
ECOCYC:G6304
Locus tag
b0548
See related
ASAP:ABE-0001876
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0539
Summary
NinE has 39% identity to gene products from the nin regions of bacteriophages and P22, though it lacks their half-zinc finger domain . [More information is available at EcoCyc: G6304].
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Genomic context

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Sequence:
NC_000913.3 (572921..573091)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene uncharacterized protein YlcH Neighboring gene DNA base-flipping protein Neighboring gene putative nuclease YbcO Neighboring gene crossover junction endodeoxyribonuclease RusA Neighboring gene uncharacterized protein YlcG Neighboring gene prophage antitermination protein Q homolog QuuD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. Mahdi AA, et al. J Mol Biol, 1996 Apr 5. PMID 8648624
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
NinE family prophage protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    572921..573091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415080.1 NinE family prophage protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415080.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0FVS9
    Conserved Domains (1) summary
    PRK09689
    Location:1 → 56
    PRK09689; prophage protein NinE; Provisional
Nucleotide Protein
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