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ybcI PF04307 family inner membrane protein YbcI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945155, updated on 3-Dec-2024

Summary

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Official Symbol
ybcI
Official Full Name
PF04307 family inner membrane protein YbcI
Primary source
ECOCYC:EG12708
Locus tag
b0527
See related
ASAP:ABE-0001812
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0520
Summary
YbcI is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: EG12708].
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Genomic context

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Sequence:
NC_000913.3 (556032..556553, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase B Neighboring gene cysteine--tRNA ligase Neighboring gene putative RNA-binding protein YbcJ Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF04307 family inner membrane protein YbcI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    556032..556553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415060.1 PF04307 family inner membrane protein YbcI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415060.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AP14
    Conserved Domains (1) summary
    COG1988
    Location:2 → 172
    YbcI; Membrane-bound metal-dependent hydrolase YbcI, DUF457 family [General function prediction only]
Nucleotide Protein
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