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ybcJ putative RNA-binding protein YbcJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945158, updated on 3-Dec-2024

Summary

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Official Symbol
ybcJ
Official Full Name
putative RNA-binding protein YbcJ
Primary source
ECOCYC:EG12879
Locus tag
b0528
See related
ASAP:ABE-0001816
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0521
Summary
Ribosome-associated protein (Jiang, 2007). [More information is available at EcoGene: EG12879]. A solution structure of YbcJ has been determined. [More information is available at EcoCyc: EG12879].
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Genomic context

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Sequence:
NC_000913.3 (556661..556873, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene cysteine--tRNA ligase Neighboring gene PF04307 family inner membrane protein YbcI Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase Neighboring gene putative fimbrial protein SfmA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Purification, characterization, cloning, and amino acid sequence of the bifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase from Escherichia coli. D'Ari L, et al. J Biol Chem, 1991 Dec 15. PMID 1748668
  2. Gene targeting using randomly inserted group II introns (targetrons) recovered from an Escherichia coli gene disruption library. Yao J, et al. Nucleic Acids Res, 2005. PMID 15947133, Free PMC Article
  3. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
  4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  5. The solution structure of YbcJ from Escherichia coli reveals a recently discovered alphaL motif involved in RNA binding. Volpon L, et al. J Bacteriol, 2003 Jul. PMID 12837795, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within translation EXP
Inferred from Experiment
more info
 PubMed 
acts_upstream_of_or_within translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative RNA-binding protein YbcJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    556661..556873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415061.2 putative RNA-binding protein YbcJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415061.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7A6KNQ6
    Conserved Domains (1) summary
    PRK11507
    Location:1 → 70
    PRK11507; ribosome-associated protein YbcJ
Nucleotide Protein
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