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hcxA hydroxycarboxylate dehydrogenase A [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945212, updated on 17-Dec-2024

Summary

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Official Symbol
hcxA
Official Full Name
hydroxycarboxylate dehydrogenase A
Primary source
ECOCYC:EG12692
Locus tag
b0599
See related
ASAP:ABE-0002065
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0593; ybdH
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Genomic context

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Sequence:
NC_000913.3 (632389..633477, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyruvate transporter CstA Neighboring gene PF04328 family protein YbdD Neighboring gene methionine transaminase Neighboring gene ParB-like nuclease domain-containing protein YbdM Neighboring gene putative PAPS reductase/DUF3440 domain-containing protein YbdN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  3. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  4. Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli. Sévin DC, et al. Nat Methods, 2017 Feb. PMID 27941785
  5. Molecular and functional characterization of a carbon starvation gene of Escherichia coli. Schultz JE, et al. J Mol Biol, 1991 Mar 5. PMID 1848300

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 2-hydroxyglutarate dehydrogenase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on CH-OH group of donors IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
hydroxycarboxylate dehydrogenase A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    632389..633477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415132.1 hydroxycarboxylate dehydrogenase A [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415132.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7R554
    Conserved Domains (1) summary
    PRK10586
    Location:1 → 362
    PRK10586; putative oxidoreductase; Provisional
Nucleotide Protein
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