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ybaT putative transporter YbaT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945363, updated on 3-Dec-2024

Summary

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Official Symbol
ybaT
Official Full Name
putative transporter YbaT
Primary source
ECOCYC:G6262
Locus tag
b0486
See related
ASAP:ABE-0001690
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0480
Summary
YbaT is suggested to be involved in selenate transport. [More information is available at EcoGene: EG13248]. YbaT is a putative amino acid/amine transporter of the APC superfamily. [More information is available at EcoCyc: G6262].
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Genomic context

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Sequence:
NC_000913.3 (512576..513868)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene Cu(+) exporting P-type ATPase;soluble Cu(+) chaperone Neighboring gene glutaminase 1 Neighboring gene DNA-binding transcriptional dual regulator CueR Neighboring gene NfeD-like family protein YbbJ Neighboring gene PHB domain-containing protein QmcA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interplay between tolerance mechanisms to copper and acid stress in Escherichia coli. Djoko KY, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611214, Free PMC Article
  2. Comparative genomics of regulation of heavy metal resistance in Eubacteria. Permina EA, et al. BMC Microbiol, 2006 Jun 5. PMID 16753059, Free PMC Article
  3. A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Drew D, et al. Protein Sci, 2005 Aug. PMID 15987891, Free PMC Article
  4. Gene expression profiling of the pH response in Escherichia coli. Tucker DL, et al. J Bacteriol, 2002 Dec. PMID 12426343, Free PMC Article
  5. Genes of the GadX-GadW regulon in Escherichia coli. Tucker DL, et al. J Bacteriol, 2003 May. PMID 12730179, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to pH IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within stress response to copper ion IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within stress response to copper ion IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YbaT

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    512576..513868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415019.1 putative transporter YbaT [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415019.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FR64, A0A478LK53, A0A9P2I724
    Conserved Domains (1) summary
    COG0531
    Location:1 → 424
    PotE; Amino acid transporter [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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