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ybiW putative pyruvate formate lyase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945444, updated on 3-Dec-2024

Summary

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Official Symbol
ybiW
Official Full Name
putative pyruvate formate lyase
Primary source
ECOCYC:G6426
Locus tag
b0823
See related
ASAP:ABE-0002810
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0813; pflF
Summary
AFMB Structural Genomics target Number 86 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13328].
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Genomic context

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Sequence:
NC_000913.3 (860174..862606, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1479 domain-containing protein YbiU Neighboring gene sugar phosphatase YbiV Neighboring gene putative pyruvate formate-lyase activating enzyme YbiY Neighboring gene fructose-6-phosphate aldolase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative pyruvate formate lyase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    860174..862606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415344.1 putative pyruvate formate lyase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415344.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WSA4
    Conserved Domains (1) summary
    TIGR01774
    Location:8 → 810
    PFL2-3; glycyl radical enzyme, PFL2/glycerol dehydratase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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