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rcdA RcdA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945473, updated on 3-Dec-2024

Summary

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Official Symbol
rcdA
Official Full Name
RcdA
Primary source
ECOCYC:G6444
Locus tag
b0846
See related
ASAP:ABE-0002885
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0836; ybjK
Summary
TetR family. [More information is available at EcoGene: EG13680].
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Genomic context

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Sequence:
NC_000913.3 (887423..887959)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase Neighboring gene inner membrane protein YbjJ Neighboring gene ncRNA Neighboring gene putative transport protein YbjL

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands. Pietrzyk-Brzezinska AJ, et al. Proteins, 2022 Jan. PMID 34288132
  2. A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli. Shimada T, et al. Microbiologyopen, 2012 Dec. PMID 23233451, Free PMC Article
  3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands.
    Title: Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RcdA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    887423..887959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415367.1 RcdA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415367.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A444RHC0
    Conserved Domains (1) summary
    COG3226
    Location:1 → 178
    YbjK; DNA-binding transcriptional regulator YbjK [Transcription]
Nucleotide Protein
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