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ybjL putative transport protein YbjL [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945474, updated on 3-Dec-2024

Summary

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Official Symbol
ybjL
Official Full Name
putative transport protein YbjL
Primary source
ECOCYC:G6445
Locus tag
b0847
See related
ASAP:ABE-0002887
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0838
Summary
Predicted to be in the ST(3) structural class based on hydropathy profile (Lolkema, 2003), but is was not placed in the very similar IT superfamily in a study using phylogenetic methods (Prakash, 2003). [More information is available at EcoGene: EG13681].
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Genomic context

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Sequence:
NC_000913.3 (888134..889819, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene RcdA Neighboring gene ncRNA Neighboring gene putative inner membrane protein Neighboring gene reduced glutaredoxin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
  2. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261
  3. The ion transporter superfamily. Prakash S, et al. Biochim Biophys Acta, 2003 Dec 3. PMID 14643936
  4. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Lolkema JS, et al. J Mol Biol, 2003 Apr 11. PMID 12662917
  5. Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase. Zenno S, et al. J Bacteriol, 1996 Aug. PMID 8755878, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in monoatomic cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transport protein YbjL

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    888134..889819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415368.1 putative transport protein YbjL [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415368.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6C9Q8S5, A0A7A6U2W8, A0A8T5YG13
    Conserved Domains (1) summary
    PRK04972
    Location:1 → 558
    PRK04972; putative transporter; Provisional
Nucleotide Protein
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