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ybjO putative inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945488, updated on 3-Dec-2024

Summary

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Official Symbol
ybjO
Official Full Name
putative inner membrane protein
Primary source
ECOCYC:G6448
Locus tag
b0858
See related
ASAP:ABE-0002922
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0849
Summary
Membrane topology predictions using experimentally determined C terminus locations indicate that YbjO has 4 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6448].
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Genomic context

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Sequence:
NC_000913.3 (897989..898477)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putrescine ABC transporter ATP binding subunit Neighboring gene putrescine ABC transporter membrane subunit PotH Neighboring gene putrescine ABC transporter membrane subunit PotI Neighboring gene 23S rRNA m(5)U747 methyltransferase Neighboring gene L-arginine ABC transporter periplasmic binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  4. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative inner membrane protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    897989..898477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415379.1 putative inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415379.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5ZME8
    Conserved Domains (1) summary
    pfam10767
    Location:21 → 161
    DUF2593; Protein of unknown function (DUF2593)
Nucleotide Protein
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