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ybjS putative epimerase YbjS [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945495, updated on 17-Dec-2024

Summary

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Official Symbol
ybjS
Official Full Name
putative epimerase YbjS
Primary source
ECOCYC:G6453
Locus tag
b0868
See related
ASAP:ABE-0002949
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0859
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Genomic context

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Sequence:
NC_000913.3 (905740..906753, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3828 domain-containing lipoprotein YbjP Neighboring gene putative heavy metal binding protein YbjQ Neighboring gene N-acetylmuramoyl-L-alanine amidase D Neighboring gene putative NAD(P)-binding protein YbjT Neighboring gene low-specificity L-threonine aldolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ampicillin/penicillin-binding protein interactions as a model drug-target system to optimize affinity pull-down and mass spectrometric strategies for target and pathway identification. von Rechenberg M, et al. Proteomics, 2005 May. PMID 15761956
  2. Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification. Liu F, et al. Nat Commun, 2017 May 19. PMID 28524877, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
putative epimerase YbjS

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    905740..906753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415389.2 putative epimerase YbjS [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415389.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3PQ48, A0A140NAU1, A0A1X3J4C7, A0A1X3JJQ0, A0A7I6H5H4, A0A8E0FTI4, A0A979GDZ0, A0AAN3MET5, A0AAN4ABV7, A7ZJT7, C3TGV2, E8PZ34, J7QDD7, W1EWJ0
    Conserved Domains (1) summary
    COG0451
    Location:1 → 335
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version

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