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ycaD putative transporter YcaD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945515, updated on 17-Dec-2024

Summary

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Official Symbol
ycaD
Official Full Name
putative transporter YcaD
Primary source
ECOCYC:EG11242
Locus tag
b0898
See related
ASAP:ABE-0003056
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0889
Summary
Major Facilitator Superfamily (MFS). [More information is available at EcoGene: EG11242]. The YcaD protein is an uncharacterised member of the major facilitator superfamily (MFS) of transporters . [More information is available at EcoCyc: EG11242].
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Genomic context

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Sequence:
NC_000913.3 (945871..947019)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene dimethyl sulfoxide reductase subunit C Neighboring gene putative hydrolase YcaC Neighboring gene putative transporter YcaM Neighboring gene putative DNA-binding transcriptional regulator YcaN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microbial drug efflux proteins of the major facilitator superfamily. Saidijam M, et al. Curr Drug Targets, 2006 Jul. PMID 16842212
  2. The major facilitator superfamily. Saier MH Jr, et al. J Mol Microbiol Biotechnol, 1999 Nov. PMID 10943556
  3. A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport. Marger MD, et al. Trends Biochem Sci, 1993 Jan. PMID 8438231
  4. Major facilitator superfamily. Pao SS, et al. Microbiol Mol Biol Rev, 1998 Mar. PMID 9529885, Free PMC Article
  5. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YcaD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    945871..947019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415418.1 putative transporter YcaD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415418.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3ETS6, A0A828U8B1, A0AAN3MFM3, A0AAV3HES6, A0AAX2KE28
    Conserved Domains (1) summary
    PRK03633
    Location:1 → 381
    PRK03633; putative MFS family transporter protein; Provisional
Nucleotide Protein
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