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ycaM putative transporter YcaM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945518, updated on 3-Dec-2024

Summary

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Official Symbol
ycaM
Official Full Name
putative transporter YcaM
Primary source
ECOCYC:G6466
Locus tag
b0899
See related
ASAP:ABE-0003058
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0890
Summary
YcaM was found, in random transposon mutagenesis studies, to be required for growth in optimum (rich medium at 37 degrees C) growth conditions but not under cold conditions (15 degrees C) or in minimal medium . [More information is available at EcoCyc: G6466].
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Genomic context

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Sequence:
NC_000913.3 (947229..948659)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative hydrolase YcaC Neighboring gene putative transporter YcaD Neighboring gene putative DNA-binding transcriptional regulator YcaN Neighboring gene putative oxidoreductase YcaK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening. Serina S, et al. Res Microbiol, 2004 Oct. PMID 15380559
  2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YcaM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    947229..948659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415419.2 putative transporter YcaM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415419.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7ECC8
    Conserved Domains (1) summary
    cl40732
    Location:17 → 429
    AA_permease_2; Amino acid permease
Nucleotide Protein
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