U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ycaQ interstrand DNA crosslink repair glycosylase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945524, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
ycaQ
Official Full Name
interstrand DNA crosslink repair glycosylase
Primary source
ECOCYC:G6471
Locus tag
b0916
See related
ASAP:ABE-0003117
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
alkZ; ECK0907
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (969389..970621)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene metallo-beta-lactamase superfamily inner membrane protein YcaI Neighboring gene ATP-binding lipopolysaccharide transport protein Neighboring gene tetraacyldisaccharide 4'-kinase Neighboring gene PF03966 family protein YcaR Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase Neighboring gene putative phosphotransferase YcbJ Neighboring gene envelope biogenesis factor

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks. Bradley NP, et al. Nucleic Acids Res, 2020 Jul 27. PMID 32409837, Free PMC Article
  2. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks.
    Title: Escherichia coli YcaQ is a DNA glycosylase that unhooks DNA interstrand crosslinks.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA N-glycosylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within interstrand cross-link repair EXP
Inferred from Experiment
more info
 PubMed 
involved_in interstrand cross-link repair IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within interstrand cross-link repair IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
interstrand DNA crosslink repair glycosylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    969389..970621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415436.1 interstrand DNA crosslink repair glycosylase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415436.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376X3H8
    Conserved Domains (1) summary
    COG3214
    Location:1 → 407
    YcaQ; Uncharacterized conserved protein YcaQ, contains winged helix DNA-binding domain [General function prediction only]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.