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cspH CspA family protein CspH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945590, updated on 3-Dec-2024

Summary

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Official Symbol
cspH
Official Full Name
CspA family protein CspH
Primary source
ECOCYC:G6510
Locus tag
b0989
See related
ASAP:ABE-0003341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
cspK; ECK0979
Summary
CspH was identified as a member of the CspA family of proteins; it is most closely related to CspF, and its function is unknown . [More information is available at EcoCyc: G6510].
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Genomic context

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Sequence:
NC_000913.3 (1050963..1051175, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene threonine-rich inner membrane protein GfcA Neighboring gene IS1 family protein InsA Neighboring gene IS1 family protein InsB Neighboring gene cold shock protein CspG Neighboring gene protein YmcF Neighboring gene protein YmcE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The CspA family in Escherichia coli: multiple gene duplication for stress adaptation. Yamanaka K, et al. Mol Microbiol, 1998 Jan. PMID 9484881
  2. Applications of nucleic acid chaperone activity of CspA and its homologues. Phadtare S, et al. J Mol Microbiol Biotechnol, 2009. PMID 19556744
  3. Cold shock proteins aid coupling of transcription and translation in bacteria. El-Sharoud WM, et al. Sci Prog, 2007. PMID 17455763, Free PMC Article
  4. Folding chromosomes in bacteria: examining the role of Csp proteins and other small nucleic acid-binding proteins. Trun N, et al. Curr Top Dev Biol, 2003. PMID 12959196
  5. Comparative genomics and evolution of proteins involved in RNA metabolism. Anantharaman V, et al. Nucleic Acids Res, 2002 Apr 1. PMID 11917006, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CspA family protein CspH

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1050963..1051175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415509.1 CspA family protein CspH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415509.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    W1WNS5
    Conserved Domains (1) summary
    cl09927
    Location:1 → 70
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Nucleotide Protein
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