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ycdU uncharacterized protein YcdU [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945592, updated on 3-Dec-2024

Summary

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Official Symbol
ycdU
Official Full Name
uncharacterized protein YcdU
Primary source
ECOCYC:G6536
Locus tag
b1029
See related
ASAP:ABE-0003489
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1017
Summary
The adjacent downstream region contains four copies of the rsX tRNA-linked repeats that were origianlly annotated as protein-coding (YcdV, b1031) in U00096.1. ycdV has been dropped as an unlikely CDS prediction. [More information is available at EcoGene: EG13867]. Membrane topology predictions using experimentally determined C terminus locations indicate that YcdU has 8 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6536].
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Genomic context

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Sequence:
NC_000913.3 (1095843..1096829)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative diguanylate cyclase DgcT Neighboring gene IS3 element protein InsF Neighboring gene IS3 element protein InsE Neighboring gene pseudo Neighboring gene tRNA-Ser Neighboring gene glyoxylate/hydroxypyruvate reductase A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein YcdU

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1095843..1096829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415548.1 uncharacterized protein YcdU [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415548.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376RKG3
Nucleotide Protein
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