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yccF PF03733 family inner membrane protein YccF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945594, updated on 3-Dec-2024

Summary

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Official Symbol
yccF
Official Full Name
PF03733 family inner membrane protein YccF
Primary source
ECOCYC:G6496
Locus tag
b0961
See related
ASAP:ABE-0003253
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0952
Summary
YccF is an inner membrane protein with three predicted transmembrane domains. [More information is available at EcoCyc: G6496].
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Genomic context

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Sequence:
NC_000913.3 (1023902..1024348, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene cell division inhibitor SulA Neighboring gene transcriptional coactivator for CRP Neighboring gene putative transporter YccS Neighboring gene DNA helicase IV Neighboring gene methylglyoxal synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The molecular cloning of the gene encoding the Escherichia coli 75-kDa helicase and the determination of its nucleotide sequence and gentic map position. Wood ER, et al. J Biol Chem, 1989 May 15. PMID 2542273
  2. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
  3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PF03733 family inner membrane protein YccF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1023902..1024348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415481.1 PF03733 family inner membrane protein YccF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415481.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7JJL5, A0A8T5YCQ8
    Conserved Domains (1) summary
    COG3304
    Location:1 → 134
    YccF; Uncharacterized membrane protein YccF, DUF307 family [Function unknown]
Nucleotide Protein
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