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ycdY chaperone protein YcdY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945609, updated on 3-Dec-2024

Summary

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Official Symbol
ycdY
Official Full Name
chaperone protein YcdY
Primary source
ECOCYC:G6541
Locus tag
b1035
See related
ASAP:ABE-0003511
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1021
Summary
torD, dmsD and ycdY are paralogs. [More information is available at EcoGene: EG13871].
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Genomic context

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Sequence:
NC_000913.3 (1099640..1100194)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene glyoxylate/hydroxypyruvate reductase A Neighboring gene zinc-binding phosphatase YcdX Neighboring gene inner membrane protein YcdZ Neighboring gene curli secretion channel

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a twin-arginine leader-binding protein. Oresnik IJ, et al. Mol Microbiol, 2001 Apr. PMID 11309116
  2. Functional and structural analysis of members of the TorD family, a large chaperone family dedicated to molybdoproteins. Ilbert M, et al. Microbiology (Reading), 2004 Apr. PMID 15073303
  3. Coordinating assembly and export of complex bacterial proteins. Jack RL, et al. EMBO J, 2004 Oct 13. PMID 15385959, Free PMC Article
  4. YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family. Redelberger D, et al. J Bacteriol, 2011 Dec. PMID 21965574, Free PMC Article
  5. Differential Interactions between Tat-specific redox enzyme peptides and their chaperones. Chan CS, et al. J Bacteriol, 2009 Apr. PMID 19151138, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. YcdY is the chaperone of YcdX, a zinc protein involved in the swarming motility process.
    Title: YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
chaperone protein YcdY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1099640..1100194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415553.1 chaperone protein YcdY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415553.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3L5H563, A0A6C9QCN1
    Conserved Domains (1) summary
    COG3381
    Location:1 → 184
    TorD; Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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