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ycfT inner membrane protein YcfT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945679, updated on 3-Dec-2024

Summary

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Official Symbol
ycfT
Official Full Name
inner membrane protein YcfT
Primary source
ECOCYC:G6572
Locus tag
b1115
See related
ASAP:ABE-0003767
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1101
Summary
Membrane topology predictions using experimentally determined C terminus locations indicate that YcfT has 8 transmembrane helices and the C-terminus is located in the cytoplasm . ycfT is induced upon deletion of tqsA, which controls biofilm development by influencing the export of autoinducer 2 . [More information is available at EcoCyc: G6572].
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Genomic context

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Sequence:
NC_000913.3 (1174092..1175165, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L,D-transpeptidase LdtC Neighboring gene transcription-repair coupling factor Neighboring gene lipoprotein release complex - inner membrane subunit Neighboring gene lipoprotein release complex - ATP binding subunit Neighboring gene lipoprotein release complex - inner membrane subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
  2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  3. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article
  4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables O-acetyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in enterobacterial common antigen biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inner membrane protein YcfT

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1174092..1175165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415633.1 inner membrane protein YcfT [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415633.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AJJ0
    Conserved Domains (1) summary
    COG4763
    Location:1 → 357
    YcfT; Uncharacterized membrane protein YcfT [Function unknown]
Nucleotide Protein
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