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ymfT putative DNA-binding transcriptional regulator YmfT [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945720, updated on 3-Dec-2024

Summary

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Official Symbol
ymfT
Official Full Name
putative DNA-binding transcriptional regulator YmfT
Primary source
ECOCYC:G6590
Locus tag
b1146
See related
ASAP:ABE-0003856
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
croE; ECK1132
Summary
CroE(YmfT )is a C48Y variant of a putative Cro-like repressor protein from Shigella flexneri bacteriophage V. [More information is available at EcoGene: EG14414].
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Genomic context

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Sequence:
NC_000913.3 (1203024..1203224)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YmfI Neighboring gene uncharacterized protein YmfJ Neighboring gene putative repressor protein YmfK Neighboring gene uncharacterized protein YmfL Neighboring gene cell division inhibitor YmfM Neighboring gene pseudo Neighboring gene chimeric replication protein/phage terminase YmfN Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
putative DNA-binding transcriptional regulator YmfT

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1203024..1203224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415664.2 putative DNA-binding transcriptional regulator YmfT [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415664.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3J6F4
    Conserved Domains (1) summary
    cl22854
    Location:13 → 64
    HTH_XRE; Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Nucleotide Protein
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