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ycfK protein StfP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945726, updated on 3-Dec-2024

Summary

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Official Symbol
ycfK
Official Full Name
protein StfP
Primary source
ECOCYC:EG12877
Locus tag
b1154
See related
ASAP:ABE-0003876
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1140; stfP
Summary
The first 96 codons of StfP encode the shared Stf constant region that is fused to the StfE' variable region in the P-element P(-) orientation (Plasterk, 1985; Mehta, 2004). [More information is available at EcoGene: EG12877].
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Genomic context

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Sequence:
NC_000913.3 (1207501..1208130)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene IPR020297 domain-containing protein YmfR Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene DUF2313 domain-containing protein YmfQ Neighboring gene putative tail fiber assembly protein TfaP Neighboring gene putative tail fiber assembly protein TfaE Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The invertible P-DNA segment in the chromosome of Escherichia coli. Plasterk RH, et al. EMBO J, 1985 Jan. PMID 3894006, Free PMC Article
  2. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
  3. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
  4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
protein StfP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1207501..1208130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415672.1 protein StfP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415672.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P45581
Nucleotide Protein
Heading Accession and Version

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