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oppA oligopeptide ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945830, updated on 17-Dec-2024

Summary

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Official Symbol
oppA
Official Full Name
oligopeptide ABC transporter periplasmic binding protein
Primary source
ECOCYC:EG10674
Locus tag
b1243
See related
ASAP:ABE-0004172
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1237
Summary
Polyamine modulon. [More information is available at EcoGene: EG10674]. OppABCDF is an ATP-dependent oligopeptide transporter that is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters . [More information is available at EcoCyc: EG10674].
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Genomic context

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Sequence:
NC_000913.3 (1301182..1302813)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene MarC family putative inner membrane protein YchE Neighboring gene IS5 family transposase and trans-activator Neighboring gene murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB Neighboring gene murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Oligopeptide uptake and aminoglycoside resistance in Escherichia coli K12. Nakamatsu EH, et al. FEMS Microbiol Lett, 2007 Apr. PMID 17250759
  2. Polyamines: mysterious modulators of cellular functions. Igarashi K, et al. Biochem Biophys Res Commun, 2000 May 19. PMID 10814501
  3. Chaperone properties of the bacterial periplasmic substrate-binding proteins. Richarme G, et al. J Biol Chem, 1997 Jun 20. PMID 9188448
  4. Regulation of peptide transport in Escherichia coli: induction of the trp-linked operon encoding the oligopeptide permease. Andrews JC, et al. J Bacteriol, 1986 Feb. PMID 3511033, Free PMC Article
  5. Molecular mechanism of polyamine stimulation of the synthesis of oligopeptide-binding protein. Igarashi K, et al. J Biol Chem, 1997 Feb 14. PMID 9020114

See all (55) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the second, putative, interaction site appears to be unnecessary for the regulatory function of GcvB with regard to its oppA target mRNA.
    Title: Is the secondary putative RNA-RNA interaction site relevant to GcvB mediated regulation of oppA mRNA in Escherichia coli?
  2. N-terminus verified by Edman degradation on mature peptide
    Title: The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oligopeptide binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables peptide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chaperone-mediated protein folding IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in oligopeptide import across plasma membrane NAS
Non-traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within oligopeptide transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in peptide transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to heat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex IEA
Inferred from Electronic Annotation
more info
  
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oligopeptide ABC transporter periplasmic binding protein
NP_415759.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1301182..1302813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415759.1 oligopeptide ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415759.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3EGR6, A0A0K5VNX1, A0A148HJX2, A0A376D8J5, A0A377FAI6, A0A454A3Q1, A0A4C6ZAI4, A0AAD2GIX2, A0AAI8QT76, B1LH57
    Conserved Domains (1) summary
    PRK15104
    Location:1 → 543
    PRK15104; oligopeptide ABC transporter substrate-binding protein OppA; Provisional
Nucleotide Protein
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