U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yciO putative RNA-binding protein YciO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945854, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
yciO
Official Full Name
putative RNA-binding protein YciO
Primary source
ECOCYC:G6635
Locus tag
b1267
See related
ASAP:ABE-0004254
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1261
Summary
Crystal structures of YciO have been solved at 2.1 and 1.4 resolution. [More information is available at EcoCyc: G6635].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1324098..1324718)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene anthranilate synthase subunit TrpD Neighboring gene anthranilate synthase subunit TrpE Neighboring gene trp operon leader peptide Neighboring gene RNase AM Neighboring gene DUF2207 domain-containing protein YciQ Neighboring gene 23S rRNA pseudouridine(2605) synthase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Crystal structure of the YciO protein from Escherichia coli. Jia J, et al. Proteins, 2002 Oct 1. PMID 12211024
  2. [Primary structure of the E. coli DNA region preceding the tryptophan operon genes]. Gubanov VV, et al. Bioorg Khim, 1984 Mar. PMID 6385993
  3. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
  4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  5. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative RNA-binding protein YciO

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1324098..1324718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415783.6 putative RNA-binding protein YciO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415783.6

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376KV48, A0AAD2Z963
    Conserved Domains (1) summary
    PRK11630
    Location:1 → 206
    PRK11630; threonylcarbamoyl-AMP synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.