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insB5 IS1 family protein InsB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945867, updated on 19-Sep-2024

Summary

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Official Symbol
insB5
Official Full Name
IS1 family protein InsB
Primary source
ECOCYC:G7029
Locus tag
b1893
See related
ASAP:ABE-0006308
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0022
Summary
IS1 is inserted in 7 locations in MG1655, designated IS1ABCDEFH; IS1G is specific to the W3110 K-12 chromosome. [More information is available at EcoGene: EG60030]. IS1 is the smallest insertion sequence in Escherichia coli. [More information is available at EcoCyc: G7029].
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Genomic context

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Sequence:
NC_000913.3 (1978518..1979021, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DNA-binding transcriptional dual regulator FlhC Neighboring gene DNA-binding transcriptional dual regulator FlhD Neighboring gene IS1 family protein InsA Neighboring gene universal stress protein C Neighboring gene trehalose-6-phosphate synthase Neighboring gene trehalose-6-phosphate phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protective role for H-NS protein in IS1 transposition. Rouquette C, et al. J Bacteriol, 2004 Apr. PMID 15028694, Free PMC Article
  2. Involvement of two domains with helix-turn-helix and zinc finger motifs in the binding of IS1 transposase to terminal inverted repeats. Ohta S, et al. Mol Microbiol, 2004 Jul. PMID 15225314
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transposase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA transposition IEA
Inferred from Electronic Annotation
more info
  
involved_in transposition IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
IS1 family protein InsB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1978518..1979021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416407.1 IS1 family protein InsB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416407.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P0CF31
    UniProtKB/TrEMBL
    A0A0A8J546, A0A2H4TP98
    Conserved Domains (1) summary
    cl00721
    Location:37 → 167
    DDE_Tnp_IS1; IS1 transposase
Nucleotide Protein
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