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insH4 IS5 family transposase and trans-activator [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945896, updated on 14-Nov-2024

Summary

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Official Symbol
insH4
Official Full Name
IS5 family transposase and trans-activator
Primary source
ECOCYC:G6667
Locus tag
b1331
See related
ASAP:ABE-0004467
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0261; trs5-4; yi52_4
Summary
A single protein sequence is used for InsH although there can be allelic differences at the various IS5 locations. [More information is available at EcoGene: EG60025]. InsH is believed to be the transposase for the insertion sequence element IS5. insH spans the length of IS5 . [More information is available at EcoCyc: G6667].
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Genomic context

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Sequence:
NC_000913.3 (1396112..1397092)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene murein tripeptide ABC transporter periplasmic binding protein Neighboring gene small conductance mechanosensitive channel YnaI Neighboring gene DUF2534 domain-containing protein YnaJ Neighboring gene universal stress protein E

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transposase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transposase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA transposition IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA transposition IEA
Inferred from Electronic Annotation
more info
  
involved_in transposition IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
IS5 family transposase and trans-activator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1396112..1397092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009518770.2 IS5 family transposase and trans-activator [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376WWW9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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