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smrA DNA endonuclease SmrA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945953, updated on 3-Dec-2024

Summary

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Official Symbol
smrA
Official Full Name
DNA endonuclease SmrA
Primary source
ECOCYC:G6672
Locus tag
b1340
See related
ASAP:ABE-0004502
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1337; ydaL
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Genomic context

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Sequence:
NC_000913.3 (1405979..1406542)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative LysR-type DNA-binding transcriptional regulator AbgR Neighboring gene ncRNA Neighboring gene diguanylate cyclase DgcM Neighboring gene protein YnaN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli. Gui WJ, et al. J Struct Biol, 2011 May. PMID 21276852
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli
    Title: Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA endonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA endonuclease SmrA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1405979..1406542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415856.1 DNA endonuclease SmrA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415856.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376JZ38, A0A376MWN2
    Conserved Domains (1) summary
    NF033154
    Location:4 → 185
    endonuc_SmrA; DNA endonuclease SmrA
Nucleotide Protein
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Gene LinkOut

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