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ycjQ D-guloside 3-dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945971, updated on 3-Dec-2024

Summary

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Official Symbol
ycjQ
Official Full Name
D-guloside 3-dehydrogenase
Primary source
ECOCYC:G6651
Locus tag
b1313
See related
ASAP:ABE-0004412
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1308
Summary
Part of the putative ycjM-V operon, which encodes a putative transport and catabolism system for an unknown sugar. [More information is available at EcoGene: EG13914].
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Genomic context

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Sequence:
NC_000913.3 (1374963..1376015)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein YcjN Neighboring gene putative ABC transporter membrane subunit YcjO Neighboring gene putative ABC transporter membrane subunit YcjP Neighboring gene 3-dehydro-D-guloside 4-epimerase Neighboring gene D-glucoside 3-dehydrogenase Neighboring gene kojibiose phosphorylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Characterization of the ycjQRS Gene Cluster from Escherichia coli: A Novel Pathway for the Transformation of d-Gulosides to d-Glucosides. Mukherjee K, et al. Biochemistry, 2019 Mar 12. PMID 30742415, Free PMC Article
  2. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
D-guloside 3-dehydrogenase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1374963..1376015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415829.1 D-guloside 3-dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415829.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TLN5
    Conserved Domains (1) summary
    cd08255
    Location:79 → 350
    2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_; 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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