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ynbB putative CDP-diglyceride synthase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945972, updated on 3-Dec-2024

Summary

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Official Symbol
ynbB
Official Full Name
putative CDP-diglyceride synthase
Primary source
ECOCYC:G6728
Locus tag
b1409
See related
ASAP:ABE-0004706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1402
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Genomic context

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Sequence:
NC_000913.3 (1478226..1479122)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyridoxal reductase Neighboring gene DUF2773 domain-containing protein YdbD Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene hydrolase/methyltransferase domain-containing protein YnbC Neighboring gene phosphatase domain-containing protein YnbD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships. Skunca N, et al. PLoS Comput Biol, 2013. PMID 23308060, Free PMC Article
  2. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  3. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity, transferring phosphorus-containing groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in peptidoglycan-based cell wall biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within peptidoglycan-based cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative CDP-diglyceride synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1478226..1479122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415927.1 putative CDP-diglyceride synthase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415927.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377BI18, A0A6N8NM66
    Conserved Domains (1) summary
    COG4589
    Location:1 → 298
    YnbB; CDP-diglyceride synthetase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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